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ASM344665v1

Organism name:
Thauera sp. (b-proteobacteria)
Taxonomy check:
OK
Isolate:
UBA9855
BioSample:
SAMN08017639
BioProject:
PRJNA417962
Submitter:
University of Queensland
Date:
2018/09/04
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • annotation fails MAG completeness check
  • derived from metagenome
GenBank assembly accession:
GCA_003446655.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
DMCZ01
Assembly method:
CLC de novo assembler v. 4.4.1
Expected final version:
yes
Genome coverage:
50.65x
Sequencing technology:
Illumina HiSeq 2000

IDs: 1913751 [UID] 7272688 [GenBank]

See Genome Information for Thauera sp.

There are 56 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::04/17/2018 13:15:06
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,144
CDS (total)::3,112
Genes (coding)::2,999
CDS (coding)::2,999
Genes (RNA)::32
tRNAs::28
ncRNAs::4
Pseudo Genes (total)::113
Pseudo Genes (ambiguous residues)::10 of 113
Pseudo Genes (frameshifted)::22 of 113
Pseudo Genes (incomplete)::86 of 113
Pseudo Genes (internal stop)::7 of 113
Pseudo Genes (multiple problems)::12 of 113
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,928,876
Total ungapped length2,799,974
Gaps between scaffolds0
Number of scaffolds267
Scaffold N5015,962
Scaffold L5048
Number of contigs803
Contig N507,199
Contig L5084
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)267

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,928,8762672,799,97415,9625360

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Thauera sp.Thauera sp.

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000310225.1Thauera phenylaceticatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type88.0153.7929.99

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna