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Tur_tru_Illumina_phased_v1

Organism name:
Tursiops truncatus (common bottlenose dolphin)
Isolate:
Sample_04329
Sex:
female
BioSample:
SAMN09426418
BioProject:
PRJNA478376
Submitter:
Johns Hopkins University
Date:
2018/11/02
Assembly type:
haploid-with-alt-loci
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003435595.3 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
QUXD02
Assembly method:
DeNovoMAGIC v. SEP-2018
Expected final version:
yes
Genome coverage:
450.0x
Sequencing technology:
Illumina HiSeq; 10x Chromium

IDs: 2052701 [UID] 7689418 [GenBank]

See Genome Information for Tursiops truncatus

There are 4 assemblies for this organism

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History (Show revision history)

Comment

This is a diploid assembly from the Tursiops truncatus Sample_04329 isolate. The contigs of the primary assembly are located in QUXD02000001-QUXD02042644. The alternative haploid contigs (haplotigs) are located in QUXD02042645-QUXD02097787.

Global statistics*

Total sequence length2,407,801,651
Total ungapped length2,386,971,077
Gaps between scaffolds0
Number of scaffolds42,644
Scaffold N50931,081
Scaffold L50650
Number of contigs154,206
Contig N5027,134
Contig L5026,466
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)42,644

*Note: Statistics shown for the primary assembly-unit. See the statistics report for additional statistics.

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
haplotigs
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,407,801,65142,6442,386,971,077931,081111,5620
Unit NameScaffold
Count
Total
Length
Ungapped
Length
Scaffold
N50
Spanned
Gaps
haplotigs55,1432,408,679,0752,252,649,215627,558138,691
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