U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM343412v1

Organism name:
Faecalibacterium prausnitzii (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: AM42-11AC
BioSample:
SAMN09736539
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/08/31
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003434125.1 (latest)
RefSeq assembly accession:
GCF_003434125.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QVEZ01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1909151 [UID] 7205348 [GenBank] 7268518 [RefSeq]

See Genome Information for Faecalibacterium prausnitzii

There are 741 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/16/2018 18:33:08
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,927
CDS (total)::2,855
Genes (coding)::2,752
CDS (coding)::2,752
Genes (RNA)::72
rRNAs::4, 3 (5S, 16S)
complete rRNAs::4 (5S)
partial rRNAs::3 (16S)
tRNAs::61
ncRNAs::4
Pseudo Genes (total)::103
Pseudo Genes (ambiguous residues)::1 of 103
Pseudo Genes (frameshifted)::16 of 103
Pseudo Genes (incomplete)::79 of 103
Pseudo Genes (internal stop)::16 of 103
Pseudo Genes (multiple problems)::9 of 103
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,969,799
Total ungapped length2,969,579
Gaps between scaffolds0
Number of scaffolds31
Scaffold N50287,518
Scaffold L504
Number of contigs53
Contig N50191,791
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)31

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,969,799312,969,579287,518220

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Faecalibacterium prausnitziiFaecalibacterium prausnitzii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_032584275.1Faecalibacterium prausnitziisuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_020687425.1Faecalibacterium hominis (ex Afrizal et al. 2022)type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type87.6645.9844.59
Best-match type97.2876.4576.52

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchcoverage is less than 80%