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Source database (GenBank or RefSeq) File type

ASM341031v1

Anomalous assembly.

Organism name:

Olleya aquimaris (CFB group bacteria)

Taxonomy check:

Failed

Infraspecific name:

Strain: DAU311

BioSample:

SAMN09812781

BioProject:

PRJNA485697

Submitter:

Dong-A University

Date:

2018/08/21

Assembly type:

Assembly level:

Complete Genome

Genome representation:

full

Assembly anomaly:

unverified source organism

Excluded from RefSeq:

unverified source organism

GenBank assembly accession:

GCA_003410315.1 (latest)

RefSeq assembly accession:

GCF_003410315.1 (suppressed)

RefSeq assembly and GenBank assembly identical:

yes

Assembly method:

PacBio SMRT Analysis v. 2.3.0

Expected final version:

yes

Genome coverage:

216.25x

Sequencing technology:

PacBio

IDs: 1876761 [UID] 7116988 [GenBank] 7138388 [RefSeq]

See Genome Information for Olleya aquimaris

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003410315.1	=	GCF_003410315.1	ASM341031v1	Complete Genome	Latest GenBank, RefSeq suppressed

Comment

Bacteria and source DNA available from the submitter
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::08/15/2018 10:08:31
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,161
CDS (total)::3,103
Genes (coding)::3,063
CDS (coding)::3,063
Genes (RNA)::58
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::42
ncRNAs::4
Pseudo Genes (total)::40
Pseudo Genes (ambiguous residues)::0 of 40
Pseudo Genes (frameshifted)::11 of 40
Pseudo Genes (incomplete)::29 of 40
Pseudo Genes (internal stop)::14 of 40
Pseudo Genes (multiple problems)::12 of 40
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	3,468,188
Total ungapped length	3,468,188
Total number of chromosomes and plasmids	1

	ANI	Query coverage	Subject coverage
Declared type	82.03	31.43	36.86
Best-match type	99.10	93.70	95.02

Assembly

Genome Assembly

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Download Assembly

ASM341031v1

See Genome Information for Olleya aquimaris

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result