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ASM337010v1

Organism name:
Bifidobacterium breve (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: N6D12
BioSample:
SAMN07189843
BioProject:
PRJNA387952
Submitter:
University of Saskatchewan
Date:
2018/08/10
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003370105.1 (latest)
RefSeq assembly accession:
GCF_003370105.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
NJOA01
Assembly method:
SOAPdenovo v. 2.04-r240
Expected final version:
yes
Genome coverage:
30x
Sequencing technology:
Illumina MiSeq

IDs: 1861421 [UID] 7057718 [GenBank] 7078458 [RefSeq]

See Genome Information for Bifidobacterium breve

There are 604 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::06/23/2017 17:54:43
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,097
CDS (total)::2,041
Genes (coding)::1,896
CDS (coding)::1,896
Genes (RNA)::56
rRNAs::2, 1 (16S, 23S)
complete rRNAs::
partial rRNAs::2, 1 (16S, 23S)
tRNAs::50
ncRNAs::3
Pseudo Genes (total)::145
Pseudo Genes (ambiguous residues)::5 of 145
Pseudo Genes (frameshifted)::77 of 145
Pseudo Genes (incomplete)::79 of 145
Pseudo Genes (internal stop)::21 of 145
Pseudo Genes (multiple problems)::36 of 145
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,290,315
Total ungapped length2,257,275
Gaps between scaffolds0
Number of scaffolds42
Scaffold N50119,740
Scaffold L507
Number of contigs231
Contig N5022,615
Contig L5033
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)42

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,290,315422,257,275119,7401890

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bifidobacterium breveBifidobacterium breve

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000158015.1Bifidobacterium breve DSM 20213 = JCM 1192type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000158015.1Bifidobacterium brevetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.2689.0486.26
Best-match type98.2689.0486.26

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna