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ASM336755v1

Organism name:
Klebsiella pneumoniae (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: F1
BioSample:
SAMN08378650
BioProject:
PRJNA430804
Submitter:
Peking University People's Hospital
Date:
2018/08/08
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_003367555.1 (latest)
RefSeq assembly accession:
GCF_003367555.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SOAPdenovo v. 2.3.0
Expected final version:
yes
Genome coverage:
144.06x
Sequencing technology:
PacBio

IDs: 1856381 [UID] 7036338 [GenBank] 7054948 [RefSeq]

See Genome Information for Klebsiella pneumoniae

There are 65327 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/04/2024 20:53:24
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,681
CDSs (total)::5,559
Genes (coding)::5,427
CDSs (with protein)::5,427
Genes (RNA)::122
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::85
ncRNAs::12
Pseudo Genes (total)::132
CDSs (without protein)::132
Pseudo Genes (ambiguous residues)::0 of 132
Pseudo Genes (frameshifted)::54 of 132
Pseudo Genes (incomplete)::78 of 132
Pseudo Genes (internal stop)::16 of 132
Pseudo Genes (multiple problems)::16 of 132
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,682,889
Total ungapped length5,682,889
Total number of chromosomes and plasmids2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_003367565.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP026130.1=NZ_CP026130.1
Plasmid pF1_1CP026131.1=NZ_CP026131.1

Assembly statistics

MoleculeTotal
Length
All5,682,889
Chromosome 5,518,379
Plasmid pF1_1164,510

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Klebsiella pneumoniaeKlebsiella pneumoniae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000788015.1Klebsiella pneumoniae subsp. pneumoniaetype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000788015.1Klebsiella pneumoniaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.7591.5490.85
Best-match type99.7591.5490.85

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna