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Source database (GenBank or RefSeq) File type

ASM336717v1

Organism name:: Trinickia dinghuensis (b-proteobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: DHOM06
BioSample:: SAMN09735027
BioProject:: PRJNA483339
Submitter:: Sun Yat-sen University
Date:: 2018/08/07
Assembly type:: na
Assembly level:: Scaffold
Genome representation:: full
RefSeq category:: representative genome
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_003367175.1 (latest)
RefSeq assembly accession:: GCF_003367175.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: QRGA01
Assembly method:: Velvet v. 1.2.10
Expected final version:: yes
Genome coverage:: 228.0x
Sequencing technology:: Illumina Hiseq 4000

IDs: 1856191 [UID] 7030518 [GenBank] 7048538 [RefSeq]

See Genome Information for Trinickia dinghuensis

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003367175.1	=	GCF_003367175.1	ASM336717v1	Scaffold	Latest GenBank, Latest RefSeq

Comment

Bacteria and source DNA available from State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University. address:135 Xingang Road, W., Guangzhou 510275, P. R. China.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information ... about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::08/02/2018 17:27:36
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,719
CDS (total)::6,667
Genes (coding)::6,501
CDS (coding)::6,501
Genes (RNA)::52
rRNAs::1, 1 (16S, 23S)
complete rRNAs::1, 1 (16S, 23S)
tRNAs::46
ncRNAs::4
Pseudo Genes (total)::166
Pseudo Genes (ambiguous residues)::3 of 166
Pseudo Genes (frameshifted)::52 of 166
Pseudo Genes (incomplete)::123 of 166
Pseudo Genes (internal stop)::13 of 166
Pseudo Genes (multiple problems)::23 of 166
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	7,369,954
Total ungapped length	7,369,284
Gaps between scaffolds	0
Number of scaffolds	49
Scaffold N50	368,671
Scaffold L50	7
Number of contigs	63
Contig N50	329,317
Contig L50	9
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	49

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	86.11	45.44	52.23

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ASM336717v1

See Genome Information for Trinickia dinghuensis

Pathogen Detection Resources

History (Show revision history)

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Genome-Annotation-Data

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