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ASM336348v1

Organism name:
Marinobacter flavimaris (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: KCTC 12185
BioSample:
SAMN09748093
BioProject:
PRJNA483850
Submitter:
Chunlab
Date:
2018/08/06
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_003363485.1 (latest)
RefSeq assembly accession:
GCF_003363485.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QRDH01
Assembly method:
SPAdes v. 3.10
Expected final version:
yes
Genome coverage:
229.78x
Sequencing technology:
Illumina MiSeq

IDs: 1855581 [UID] 7017228 [GenBank] 7043098 [RefSeq]

See Genome Information for Marinobacter flavimaris

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from Byung-Yong Kim, byungyong.kim@chunlab.com.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/01/2018 13:18:58
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,138
CDS (total)::4,077
Genes (coding)::4,010
CDS (coding)::4,010
Genes (RNA)::61
rRNAs::4, 1, 1 (5S, 16S, 23S)
complete rRNAs::4, 1, 1 (5S, 16S, 23S)
tRNAs::50
ncRNAs::5
Pseudo Genes (total)::67
Pseudo Genes (ambiguous residues)::0 of 67
Pseudo Genes (frameshifted)::19 of 67
Pseudo Genes (incomplete)::48 of 67
Pseudo Genes (internal stop)::15 of 67
Pseudo Genes (multiple problems)::13 of 67
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,462,136
Total ungapped length4,462,136
Number of contigs41
Contig N50425,567
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)41

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,462,136414,462,136425,56700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Marinobacter flavimarisMarinobacter flavimaris

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002933295.1Marinobacter flavimaristype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002933295.1Marinobacter flavimaristype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.8899.84
Best-match type99.9999.8899.84

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna