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Source database (GenBank or RefSeq) File type

ASM335152v1

Organism name:: Streptococcus pneumoniae (firmicutes)
Taxonomy check:: OK
Infraspecific name:: Strain: M23734
BioSample:: SAMN09704656
BioProject:: PRJNA428178
Submitter:: Centers for Disease Control and Prevention
Date:: 2018/08/01
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_003351525.1 (latest)
RefSeq assembly accession:: GCF_003351525.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: HGAP v. 3
Expected final version:: yes
Genome coverage:: 117.6932901x
Sequencing technology:: PacBio

IDs: 1839331 [UID] 6971128 [GenBank] 6989068 [RefSeq]

See Genome Information for Streptococcus pneumoniae

Pathogen Detection Resources

There are 45843 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003351525.1	=	GCF_003351525.1	ASM335152v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::03/19/2023 01:20:17
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,194
CDSs (total)::2,121
Genes (coding)::1,956
CDSs (with protein)::1,956
Genes (RNA)::73
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::58
ncRNAs::3
Pseudo Genes (total)::165
CDSs (without protein)::165
Pseudo Genes (ambiguous residues)::0 of 165
Pseudo Genes (frameshifted)::89 of 165
Pseudo Genes (incomplete)::76 of 165
Pseudo Genes (internal stop)::66 of 165
Pseudo Genes (multiple problems)::54 of 165
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	2,114,141
Total ungapped length	2,114,141
Total number of chromosomes and plasmids	1

	ANI	Query coverage	Subject coverage
Declared type	99.44	95.29	95.44
Best-match type	99.44	95.29	95.44

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ASM335152v1

See Genome Information for Streptococcus pneumoniae

Pathogen Detection Resources

There are 45843 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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