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ASM331479v2

Organism name:: Sphingomonas paucimobilis (a-proteobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: AIMST S2
BioSample:: SAMN09521592
BioProject:: PRJNA478628
Submitter:: AIMST University
Date:: 2019/02/19
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_003314795.2 (latest)
RefSeq assembly accession:: GCF_003314795.2 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: Unicycler v. September-2018
Expected final version:: yes
Genome coverage:: 100.0x
Sequencing technology:: Oxford Nanopore MiniION; Illumina HiSeq

IDs: 2278031 [UID] 8550538 [GenBank] 8557858 [RefSeq]

See Genome Information for Sphingomonas paucimobilis

Pathogen Detection Resources

There are 23 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003314795.2	=	GCF_003314795.2	ASM331479v2	Complete Genome	Latest GenBank, Latest RefSeq
GCA_003314795.1	=	GCF_003314795.1	ASM331479v1	Contig	Replaced GenBank, Replaced RefSeq

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from COMBio, AIMST University

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Name::GCF_003314795.2-RS_2024_03_30
Annotation Date::03/30/2024 03:41:25
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,780
CDSs (total)::3,711
Genes (coding)::3,675
CDSs (with protein)::3,675
Genes (RNA)::69
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::57
ncRNAs::3
Pseudo Genes (total)::36
CDSs (without protein)::36
Pseudo Genes (ambiguous residues)::0 of 36
Pseudo Genes (frameshifted)::17 of 36
Pseudo Genes (incomplete)::26 of 36
Pseudo Genes (internal stop)::3 of 36
Pseudo Genes (multiple problems)::9 of 36
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	4,005,505
Total ungapped length	4,005,505
Total number of chromosomes and plasmids	1

	ANI	Query coverage	Subject coverage
Declared type	99.97	92.68	85.01
Best-match type	99.97	92.68	85.01

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ASM331479v2

See Genome Information for Sphingomonas paucimobilis

Pathogen Detection Resources

There are 23 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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