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Source database (GenBank or RefSeq) File type

ASM325587v1

Organism name:: Limosilactobacillus fermentum (firmicutes)
Taxonomy check:: OK
Infraspecific name:: Strain: CBA7106
BioSample:: SAMN07224244
BioProject:: PRJNA390215
Submitter:: Korea Food Research Institute
Date:: 2018/06/18
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_003255875.1 (latest)
RefSeq assembly accession:: GCF_003255875.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: HGAP v. 3.0
Expected final version:: yes
Genome coverage:: 270.0x
Sequencing technology:: PacBio

IDs: 1767771 [UID] 6691438 [GenBank] 6714128 [RefSeq]

See Genome Information for Limosilactobacillus fermentum

Pathogen Detection Resources

There are 341 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003255875.1	=	GCF_003255875.1	ASM325587v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Bacteria and source DNA available from Research Group of Gut Microbiome, Korea Food Research Institute, 62 Anyangpangyo-ro 1201beon-gil, Bundang-gu, Seongnam-si, Gyeonggi-do, 13539, Republic of Korea.
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP ... can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::03/25/2023 21:10:55
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,070
CDSs (total)::1,994
Genes (coding)::1,894
CDSs (with protein)::1,894
Genes (RNA)::76
rRNAs::5, 5, 5 (5S, 16S, 23S)
complete rRNAs::5, 5, 5 (5S, 16S, 23S)
tRNAs::58
ncRNAs::3
Pseudo Genes (total)::100
CDSs (without protein)::100
Pseudo Genes (ambiguous residues)::0 of 100
Pseudo Genes (frameshifted)::26 of 100
Pseudo Genes (incomplete)::63 of 100
Pseudo Genes (internal stop)::35 of 100
Pseudo Genes (multiple problems)::22 of 100
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	2,042,277
Total ungapped length	2,042,277
Total number of chromosomes and plasmids	1

	ANI	Query coverage	Subject coverage
Declared type	99.27	86.62	92.84
Best-match type	99.27	86.62	92.84

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ASM325587v1

See Genome Information for Limosilactobacillus fermentum

Pathogen Detection Resources

There are 341 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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