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ASM320786v1

Organism name:: Komagataeibacter sucrofermentans (a-proteobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: LMG 18788
BioSample:: SAMN07311657
BioProject:: PRJNA389382
Submitter:: Faculty of Natural Sciences and Mathematics
Date:: 2018/06/11
Assembly type:: na
Assembly level:: Contig
Genome representation:: full
RefSeq category:: representative genome
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_003207865.1 (latest)
RefSeq assembly accession:: GCF_003207865.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: NKUA01
Assembly method:: SPAdes v. FEBRUARY-2017; SMALT v. FEBRUARY-2017
Expected final version:: yes
Genome coverage:: 266.6x
Sequencing technology:: Illumina HiSeq 4000

IDs: 1744331 [UID] 6628278 [GenBank] 6659918 [RefSeq]

See Genome Information for Komagataeibacter sucrofermentans

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003207865.1	=	GCF_003207865.1	ASM320786v1	Contig	Latest GenBank, Latest RefSeq

Comment

Bacteria and source DNA available from BCCM/LMG bacteria collection.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::07/05/2017 15:43:14
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,150
CDS (total)::3,092
Genes (coding)::2,979
CDS (coding)::2,979
Genes (RNA)::58
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs:: 
tRNAs::51
ncRNAs::4
Pseudo Genes (total)::113
Pseudo Genes (ambiguous residues)::0 of 113
Pseudo Genes (frameshifted)::44 of 113
Pseudo Genes (incomplete)::77 of 113
Pseudo Genes (internal stop)::24 of 113
Pseudo Genes (multiple problems)::27 of 113
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	3,363,922
Total ungapped length	3,363,922
Number of contigs	83
Contig N50	145,161
Contig L50	8
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	83

	ANI	Query coverage	Subject coverage
Declared type	100.00	99.74	99.75
Best-match type	100.00	99.74	99.75

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ASM320786v1

See Genome Information for Komagataeibacter sucrofermentans

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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