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ASM320203v1

Organism name:
Aquitalea magnusonii (b-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 25134
BioSample:
SAMN09074864
BioProject:
PRJNA463365
Submitter:
DOE Joint Genome Institute
Date:
2018/06/07
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_003202035.1 (latest)
RefSeq assembly accession:
GCF_003202035.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QJKC01
Assembly method:
SPAdes v. 3.10.1
Expected final version:
no
Genome coverage:
274.0x
Sequencing technology:
Illumina HiSeq

IDs: 1739691 [UID] 6613438 [GenBank] 6621238 [RefSeq]

See Genome Information for Aquitalea magnusonii

There are 5 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length4,405,446
Total ungapped length4,405,154
Gaps between scaffolds0
Number of scaffolds49
Scaffold N50214,761
Scaffold L508
Number of contigs52
Contig N50202,549
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)49

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,405,446494,405,154214,76130

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Aquitalea magnusoniiAquitalea magnusonii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001515285.1Aquitalea magnusoniitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001515285.1Aquitalea magnusoniitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9695.7797.42
Best-match type99.9695.7797.42

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna