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Source database (GenBank or RefSeq) File type

ASM319374v1

Organism name:: Staphylococcus aureus (firmicutes)
Taxonomy check:: OK
Infraspecific name:: Strain: AR_0470
BioSample:: SAMN07291563
BioProject:: PRJNA316321
Submitter:: FDA/CDC
Date:: 2018/06/06
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_003193745.1 (latest)
RefSeq assembly accession:: GCF_003193745.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: canu v. 1.4
Genome coverage:: 26.95x
Sequencing technology:: Pacbio; Illumina

IDs: 1735571 [UID] 6600848 [GenBank] 6614178 [RefSeq]

See Genome Information for Staphylococcus aureus

Pathogen Detection Resources

There are 90961 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003193745.1	=	GCF_003193745.1	ASM319374v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::03/12/2023 01:10:53
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,935
CDSs (total)::2,854
Genes (coding)::2,745
CDSs (with protein)::2,745
Genes (RNA)::81
rRNAs::7, 6, 6 (5S, 16S, 23S)
complete rRNAs::7, 6, 6 (5S, 16S, 23S)
tRNAs::58
ncRNAs::4
Pseudo Genes (total)::109
CDSs (without protein)::109
Pseudo Genes (ambiguous residues)::0 of 109
Pseudo Genes (frameshifted)::65 of 109
Pseudo Genes (incomplete)::36 of 109
Pseudo Genes (internal stop)::26 of 109
Pseudo Genes (multiple problems)::15 of 109
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	2,963,657
Total ungapped length	2,963,657
Total number of chromosomes and plasmids	1

	ANI	Query coverage	Subject coverage
Declared type	97.52	87.21	92.89
Best-match type	97.52	87.21	92.89

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ASM319374v1

See Genome Information for Staphylococcus aureus

Pathogen Detection Resources

There are 90961 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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