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ASM318418v1

Organism name:
Legionella qingyii (g-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: km488
BioSample:
SAMN09090942
BioProject:
PRJNA465828
Submitter:
kingMed Center for Clinical Laborary
Date:
2018/06/03
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_003184185.1 (latest)
RefSeq assembly accession:
GCF_003184185.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QHJG01
Assembly method:
Velvet v. 1.2.10
Expected final version:
yes
Genome coverage:
600.0x
Sequencing technology:
Illumina NextSeq

IDs: 1733291 [UID] 6591238 [GenBank] 6609168 [RefSeq]

See Genome Information for Legionella qingyii

There are 3 assemblies for this organism

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History (Show revision history)

Comment

Bacteria and source DNA available from Haiyan Wu.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::05/29/2018 22:34:03
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,129
CDS (total)::4,080
Genes (coding)::3,955
CDS (coding)::3,955
Genes (RNA)::49
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1 (16S, 23S)
partial rRNAs::1 (5S)
tRNAs::41
ncRNAs::5
Pseudo Genes (total)::125
Pseudo Genes (ambiguous residues)::12 of 125
Pseudo Genes (frameshifted)::51 of 125
Pseudo Genes (incomplete)::69 of 125
Pseudo Genes (internal stop)::28 of 125
Pseudo Genes (multiple problems)::29 of 125
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,241,559
Total ungapped length5,239,497
Gaps between scaffolds0
Number of scaffolds99
Scaffold N50133,790
Scaffold L5014
Number of contigs173
Contig N5096,321
Contig L5016
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)99

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,241,559995,239,497133,790740
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