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ASM314387v1

Organism name:
Candidatus Liberibacter asiaticus (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AHCA1
BioSample:
SAMN09095725
BioProject:
PRJNA470611
Submitter:
San Joaquin Valley Agricultural Sciences Center, USDA
Date:
2018/05/20
Assembly type:
na
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_003143875.1 (latest)
RefSeq assembly accession:
GCF_003143875.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Bowtie2 v. 2.2.6
Expected final version:
no
Genome coverage:
69.0x
Sequencing technology:
Illumina HiSeq

IDs: 1712051 [UID] 6516418 [GenBank] 6577308 [RefSeq]

See Genome Information for Candidatus Liberibacter asiaticus

There are 46 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::05/01/2023 02:07:42
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,099
CDSs (total)::1,043
Genes (coding)::1,010
CDSs (with protein)::1,010
Genes (RNA)::56
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::44
ncRNAs::3
Pseudo Genes (total)::33
CDSs (without protein)::33
Pseudo Genes (ambiguous residues)::0 of 33
Pseudo Genes (frameshifted)::13 of 33
Pseudo Genes (incomplete)::23 of 33
Pseudo Genes (internal stop)::8 of 33
Pseudo Genes (multiple problems)::8 of 33
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,233,755
Total ungapped length1,209,333
Gaps between scaffolds0
Number of scaffolds1
Scaffold N501,233,755
Scaffold L501
Number of contigs21
Contig N50262,392
Contig L502
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)1

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_003143885.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP029348.1=NZ_CP029348.1

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Chromosome 1,233,75511,209,3331,233,755210

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Liberibacter asiaticusCandidatus Liberibacter asiaticus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000590865.3Candidatus Liberibacter asiaticusreftype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000590865.3Candidatus Liberibacter asiaticusreftype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9299.9098.20
Best-match type99.9299.9098.20

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna