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Ppicta_assembly_v1

Organism name:
Paroedura picta (lizards)
BioSample:
SAMD00069447
BioProject:
PRJDB5392
Submitter:
Phyloinformatics Unit, Center for Life Science Technologies (CLST), RIKEN
Date:
2018/03/22
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003118565.1 (replaced)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
BDOT01
Assembly method:
Platanus v. 1.2.1
Genome coverage:
75x
Sequencing technology:
Illumina HiSeq 1500

IDs: 1696521 [UID] 6482938 [GenBank]

See Genome Information for Paroedura picta

History (Show revision history)

Comment

Gene annotation, coding nucleotide sequences, and amino acid sequences are available at Reptiliomix.
http://www2.clst.riken.jp/phylo/reptiliomix.html

Global statistics

Total sequence length1,694,157,353
Total ungapped length1,541,883,647
Gaps between scaffolds0
Number of scaffolds110,906
Scaffold N504,106,116
Scaffold L5093
Number of contigs239,298
Contig N5015,225
Contig L5024,442
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)110,906

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,694,157,353110,9061,541,883,6474,106,116128,3920
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