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arahy.Tifrunner.gnm1.KYV3

Organism name:
Arachis hypogaea (peanut)
Infraspecific name:
Cultivar: Tifrunner
BioSample:
SAMN08051159
BioProject:
PRJNA419393
Submitter:
International Peanut Genome Initiative
Date:
2018/05/30
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_003086295.2 (latest)
RefSeq assembly accession:
GCF_003086295.2 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome Pltd (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
PIVG01
Assembly method:
MECAT v. 2017-07; Arrow v. 2017-07
Expected final version:
yes
Genome coverage:
48.0x
Sequencing technology:
PacBio

IDs: 2580791 [UID] 9344118 [GenBank] 9491378 [RefSeq]

See Genome Information for Arachis hypogaea

There are 3 assemblies for this organism

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History (Show revision history)

Global statistics

Total sequence length2,557,073,284
Total ungapped length2,553,177,925
Gaps between scaffolds0
Number of scaffolds385
Scaffold N50135,150,084
Scaffold L509
Number of contigs4,040
Contig N501,498,096
Contig L50461
Total number of chromosomes and plasmids21
Number of component sequences (WGS or clone)385

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_003086305.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome Arahy.01CM009801.1=NC_037618.10
Chromosome Arahy.02CM009802.1=NC_037619.10
Chromosome Arahy.03CM009803.1=NC_037620.10
Chromosome Arahy.04CM009804.1=NC_037621.10
Chromosome Arahy.05CM009805.1=NC_037622.10
Chromosome Arahy.06CM009806.1=NC_037623.10
Chromosome Arahy.07CM009807.1=NC_037624.10
Chromosome Arahy.08CM009808.1=NC_037625.10
Chromosome Arahy.09CM009809.1=NC_037626.10
Chromosome Arahy.10CM009810.1=NC_037627.10
Chromosome Arahy.11CM009811.1=NC_037628.10
Chromosome Arahy.12CM009812.1=NC_037629.10
Chromosome Arahy.13CM009813.1=NC_037630.10
Chromosome Arahy.14CM009814.1=NC_037631.10
Chromosome Arahy.15CM009816.1=NC_037632.10
Chromosome Arahy.16CM009817.1=NC_037633.10
Chromosome Arahy.17CM009818.1=NC_037634.10
Chromosome Arahy.18CM009819.1=NC_037635.10
Chromosome Arahy.19CM009815.1=NC_037636.10
Chromosome Arahy.20CM009820.1=NC_037637.10
unplacedn/an/an/a364

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All2,556,916,8933842,553,021,534135,150,0843,6550
Chromosome Arahy.01112,420,8541112,264,854112,420,8541560
Chromosome Arahy.02102,981,1631102,751,163102,981,1631940
Chromosome Arahy.03143,813,5061143,589,506143,813,5061790
Chromosome Arahy.04128,801,7421128,555,721128,801,7422380
Chromosome Arahy.05115,930,3441115,758,344115,930,3441720
Chromosome Arahy.06115,504,3421115,283,342115,504,3422120
Chromosome Arahy.0781,119,488181,007,48881,119,4881120
Chromosome Arahy.0851,897,010151,844,01051,897,010440
Chromosome Arahy.09120,519,6981120,390,698120,519,6981290
Chromosome Arahy.10117,088,2371116,853,237117,088,2372350
Chromosome Arahy.11149,299,3061149,137,306149,299,3061620
Chromosome Arahy.12120,579,0881120,444,088120,579,0881350
Chromosome Arahy.13146,725,0061146,525,006146,725,0061730
Chromosome Arahy.14143,237,2721143,086,272143,237,2721510
Chromosome Arahy.15160,879,7081160,694,708160,879,7081490
Chromosome Arahy.16154,808,3471154,560,317154,808,3472220
Chromosome Arahy.17134,922,4361134,751,436134,922,4361620
Chromosome Arahy.18135,150,0841134,927,084135,150,0842050
Chromosome Arahy.19158,625,7641158,384,764158,625,7642320
Chromosome Arahy.20143,980,3301143,798,330143,980,3301820
unplaced18,633,16836418,413,860322,6202110
MoleculeTotal
Length
Chloroplast Pltd156,391
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