U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM304496v1

Organism name:
Neisseria subflava (b-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: C2011020199
BioSample:
SAMN08299218
BioProject:
PRJNA428750
Submitter:
Centers for Disease Control and Prevention
Date:
2018/04/09
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_003044965.1 (latest)
RefSeq assembly accession:
GCF_003044965.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
POXN01
Assembly method:
SPAdes v. 3.11
Expected final version:
yes
Genome coverage:
17.01718287x
Sequencing technology:
Illumina MiSeq

IDs: 1675301 [UID] 6360608 [GenBank] 6404048 [RefSeq]

See Genome Information for Neisseria subflava

There are 47 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,291,329
Total ungapped length2,291,329
Number of contigs31
Contig N50264,516
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)31

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,291,329312,291,329264,51600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Neisseria subflavaNeisseria subflava

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_031190635.1Neisseria subflavasuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_023472875.1Neisseria perflavasuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type95.0882.3685.94
Best-match type95.4384.6285.58

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna