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Source database (GenBank or RefSeq) File type

ASM304393v1

Organism name:: Prevotella sp. oral taxon 313 (CFB group bacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: F0648
BioSample:: SAMN04435865
BioProject:: PRJNA282954
Submitter:: The Forsyth Institute
Date:: 2018/04/06
Assembly type:: na
Assembly level:: Contig
Genome representation:: full
GenBank assembly accession:: GCA_003043935.1 (latest)
RefSeq assembly accession:: GCF_003043935.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: PYXE01
Assembly method:: SMRT Analysis RS_HGAP_Assembly.2 v. 2.3.0.140936.p5.167094
Expected final version:: no
Genome coverage:: 190x
Sequencing technology:: PacBio

IDs: 1669321 [UID] 6348568 [GenBank] 6383198 [RefSeq]

See Genome Information for Prevotella sp. oral taxon 313

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003043935.1	=	GCF_003043935.1	ASM304393v1	Contig	Latest GenBank, Latest RefSeq

Comment

Source DNA and bacterial cultures: P. Murugkar, T. A. Joyce, and F. E. Dewhirst Direct requests to the Human Oral Microbiome Project, The Forsyth Institute, 245 First Street, Cambridge, MA, 02142, USA.
Annotation was added by the NCBI Prokaryotic Genome ... Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::03/31/2018 08:17:51
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,152
CDS (total)::3,090
Genes (coding)::2,901
CDS (coding)::2,901
Genes (RNA)::62
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::48
ncRNAs::2
Pseudo Genes (total)::189
Pseudo Genes (ambiguous residues)::0 of 189
Pseudo Genes (frameshifted)::74 of 189
Pseudo Genes (incomplete)::85 of 189
Pseudo Genes (internal stop)::82 of 189
Pseudo Genes (multiple problems)::48 of 189
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	3,915,696
Total ungapped length	3,915,696
Number of contigs	3
Contig N50	3,564,033
Contig L50	1
Total number of chromosomes and plasmids	1
Number of component sequences (WGS or clone)	3

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Plasmid unnamed1	CM009686.1	=	NZ_CM009686.1	0
unplaced	n/a	n/a	n/a	2

Molecule	Total Length	Contig Count	Ungapped Length	Contig N50
All	3,915,696	3	3,915,696	3,564,033
Plasmid unnamed1	9,432	1	9,432	9,432
unplaced	3,906,264	2	3,906,264	3,564,033

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	96.62	78.31	84.10

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ASM304393v1

See Genome Information for Prevotella sp. oral taxon 313

Pathogen Detection Resources

History (Show revision history)

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Genome-Annotation-Data

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