U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM303167v1

Organism name:
Pseudomonas palleroniana (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: LMG 23076
BioSample:
SAMN08801631
BioProject:
PRJNA445872
Submitter:
Ottawa Research and Development Center
Date:
2018/04/03
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_003031675.1 (latest)
RefSeq assembly accession:
GCF_003031675.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
PYWX01
Assembly method:
ABySS v. 1.5.2
Expected final version:
no
Genome coverage:
165.0x
Sequencing technology:
Illumina MiSeq

IDs: 1657521 [UID] 6317838 [GenBank] 6366758 [RefSeq]

See Genome Information for Pseudomonas palleroniana

There are 8 assemblies for this organism

See more

History (Show revision history)

Comment

Bacteria and source DNA available from James Tambong, Ottawa Research and Development Centre, 960 Carling Avenue, Ottawa, Ontario, Canada. K1A 0C6.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found ... here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::03/29/2018 12:05:38
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,591
CDS (total)::5,518
Genes (coding)::5,414
CDS (coding)::5,414
Genes (RNA)::73
rRNAs::5, 1, 1 (5S, 16S, 23S)
complete rRNAs::5, 1, 1 (5S, 16S, 23S)
partial rRNAs::
tRNAs::62
ncRNAs::4
Pseudo Genes (total)::104
Pseudo Genes (ambiguous residues)::0 of 104
Pseudo Genes (frameshifted)::37 of 104
Pseudo Genes (incomplete)::66 of 104
Pseudo Genes (internal stop)::12 of 104
Pseudo Genes (multiple problems)::11 of 104
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,120,652
Total ungapped length6,120,652
Number of contigs91
Contig N50134,607
Contig L5014
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)91

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,120,652916,120,652134,60700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pseudomonas palleronianaPseudomonas palleroniana

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_008801495.1Pseudomonas palleronianatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_008801495.1Pseudomonas palleronianatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.6293.05
Best-match type99.9999.6293.05

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna