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Neophocaena_asiaeorientalis_V1

Organism name:
Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise)
Infraspecific name:
Breed: wild
Sex:
male
BioSample:
SAMN05831577
BioProject:
PRJNA343136
Submitter:
Nanjing normal university
Date:
2018/04/03
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003031525.1 (replaced)
RefSeq assembly accession:
GCF_003031525.1 (replaced)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
MKKW01
Assembly method:
SOAPdenovo v. 2.39
Genome coverage:
106x
Sequencing technology:
Illumina HiSeq2000

IDs: 1657611 [UID] 6318068 [GenBank] 6364258 [RefSeq]

See Genome Information for Neophocaena asiaeorientalis

There are 3 assemblies for this organism

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History (Show revision history)

Comment

In May 2021 three sequences (MKKW01055910.1, MKKW01059907.1 and MKKW01013959.1) were suppressed because they are contaminants

Global statistics

Total sequence length2,284,628,084
Total ungapped length2,268,281,269
Gaps between scaffolds0
Number of scaffolds13,699
Scaffold N506,341,296
Scaffold L50103
Number of contigs66,346
Contig N5086,003
Contig L507,730
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)66,346

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,284,611,69913,6982,268,264,8846,341,29652,6470
MoleculeTotal
Length
Mitochondrion MT16,385
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