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ASM302555v1

Organism name:
Photobacterium lutimaris (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: JCM 13586
BioSample:
SAMN07327755
BioProject:
PRJNA243331
Submitter:
FDA/CFSAN
Date:
2018/03/31
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_003025555.1 (latest)
RefSeq assembly accession:
GCF_003025555.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
PYMH01
Assembly method:
SPAdes v. 3.11.0
Expected final version:
no
Genome coverage:
111x
Sequencing technology:
Illumina MiSeq

IDs: 1654831 [UID] 6310558 [GenBank] 6367388 [RefSeq]

See Genome Information for Photobacterium lutimaris

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::03/26/2018 13:15:11
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,391
CDS (total)::5,224
Genes (coding)::5,149
CDS (coding)::5,149
Genes (RNA)::167
rRNAs::3, 5, 4 (5S, 16S, 23S)
complete rRNAs::3 (5S)
partial rRNAs::5, 4 (16S, 23S)
tRNAs::149
ncRNAs::6
Pseudo Genes (total)::75
Pseudo Genes (ambiguous residues)::0 of 75
Pseudo Genes (frameshifted)::30 of 75
Pseudo Genes (incomplete)::54 of 75
Pseudo Genes (internal stop)::12 of 75
Pseudo Genes (multiple problems)::19 of 75
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,967,087
Total ungapped length5,967,087
Number of contigs51
Contig N50330,217
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)51

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,967,087515,967,087330,21700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Photobacterium lutimarisPhotobacterium lutimaris

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_004363665.1Photobacterium lutimaristype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_004363665.1Photobacterium lutimaristype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.7099.95
Best-match type99.9999.7099.95

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna