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ASM300425v1

Organism name:: Legionella pneumophila subsp. fraseri (g-proteobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: F-4198
BioSample:: SAMN06928761
BioProject:: PRJNA376177
Submitter:: Centers for Disease Control and Prevention
Date:: 2018/03/15
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_003004255.1 (latest)
RefSeq assembly accession:: GCF_003004255.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: HGAP v. HGAP3
Expected final version:: yes
Genome coverage:: 79.48x
Sequencing technology:: PacBio

IDs: 1633201 [UID] 6235458 [GenBank] 6249148 [RefSeq]

See Genome Information for Legionella pneumophila

Pathogen Detection Resources

There are 5728 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003004255.1	=	GCF_003004255.1	ASM300425v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::05/12/2023 02:15:11
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,203
CDSs (total)::3,147
Genes (coding)::3,104
CDSs (with protein)::3,104
Genes (RNA)::56
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::43
ncRNAs::4
Pseudo Genes (total)::43
CDSs (without protein)::43
Pseudo Genes (ambiguous residues)::0 of 43
Pseudo Genes (frameshifted)::16 of 43
Pseudo Genes (incomplete)::26 of 43
Pseudo Genes (internal stop)::11 of 43
Pseudo Genes (multiple problems)::9 of 43
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	3,550,044
Total ungapped length	3,550,044
Total number of chromosomes and plasmids	2

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CP021279.1	=	NZ_CP021279.1
Plasmid unnamed	CP021280.1	=	NZ_CP021280.1

Molecule	Total Length
All	3,550,044
Chromosome	3,461,540
Plasmid unnamed	88,504

	ANI	Query coverage	Subject coverage
Declared type	98.88	92.81	94.27
Best-match type	98.88	92.81	94.27

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ASM300425v1

See Genome Information for Legionella pneumophila

Pathogen Detection Resources

There are 5728 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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