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ASM300295v1

Organism name:
Glycomyces artemisiae (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CGMCC 4.7067
BioSample:
SAMN06296459
BioProject:
PRJNA370111
Submitter:
DOE Joint Genome Institute
Date:
2018/03/15
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_003002955.1 (latest)
RefSeq assembly accession:
GCF_003002955.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
PVTJ01
Assembly method:
SPAdes v. 3.9.0
Expected final version:
no
Genome coverage:
135.0x
Sequencing technology:
Illumina HiSeq

IDs: 1632541 [UID] 6233868 [GenBank] 6249728 [RefSeq]

See Genome Information for Glycomyces artemisiae

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length5,787,645
Total ungapped length5,787,562
Gaps between scaffolds0
Number of scaffolds22
Scaffold N50491,896
Scaffold L504
Number of contigs23
Contig N50491,896
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)22

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,787,645225,787,562491,89610

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Glycomyces artemisiaeGlycomyces artemisiae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003265355.1Glycomyces dulcitolivoranstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type88.3870.3071.61

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected