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ASM299859v1

Organism name:
Haemophilus sp. oral taxon 036 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: F0629
BioSample:
SAMN08439034
BioProject:
PRJNA282954
Submitter:
The Forsyth Institute
Date:
2018/03/14
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_002998595.1 (latest)
RefSeq assembly accession:
GCF_002998595.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SMRT Analysis RS_HGAP_Assembly.2 v. 2.3.0.140936.p5.167094
Genome coverage:
98x
Sequencing technology:
PacBio

IDs: 1630091 [UID] 6222068 [GenBank] 6241668 [RefSeq]

See Genome Information for Haemophilus sp. oral taxon 036

History (Show revision history)

Comment

Source DNA and bacterial cultures: P. P. Murugkar, N. Huang, and F. E. Dewhirst Direct requests to the Human Oral Microbiome Project, The Forsyth Institute, 245 First Street, Cambridge, MA, 02142, USA.
Annotation was added by the NCBI Prokaryotic Genome ... Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/07/2022 00:45:00
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,715
CDSs (total)::1,635
Genes (coding)::1,615
CDSs (with protein)::1,615
Genes (RNA)::80
rRNAs::7, 6, 6 (5S, 16S, 23S)
complete rRNAs::7, 6, 6 (5S, 16S, 23S)
tRNAs::57
ncRNAs::4
Pseudo Genes (total)::20
CDSs (without protein)::20
Pseudo Genes (ambiguous residues)::0 of 20
Pseudo Genes (frameshifted)::14 of 20
Pseudo Genes (incomplete)::9 of 20
Pseudo Genes (internal stop)::7 of 20
Pseudo Genes (multiple problems)::7 of 20
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,805,716
Total ungapped length1,805,716
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_002998625.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP027235.1=NZ_CP027235.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,805,716

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Haemophilus sp. oral taxon 036Haemophilus sp. oral taxon 036

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001679045.1Haemophilus haemolyticustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type93.8679.6978.79

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna
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