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RchiOBHm-V2

Organism name:
Rosa chinensis (China rose)
Infraspecific name:
Cultivar: Old Blush
BioSample:
SAMN07737764
BioProject:
PRJNA413292
Submitter:
INRA/CNRS
Date:
2018/03/13
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_002994745.1 (replaced)
RefSeq assembly accession:
GCF_002994745.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: chromosomes MT and Pltd (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
PDCK01
Assembly method:
TIL-R v. Rev: 523; CANU v. 1.6
Expected final version:
no
Genome coverage:
80.0x

IDs: 1628711 [UID] 6211378 [GenBank] 6245068 [RefSeq]

See Genome Information for Rosa chinensis

History (Show revision history)

Global statistics

Total sequence length513,854,168
Total ungapped length513,850,868
Gaps between scaffolds0
Number of scaffolds45
Scaffold N5069,643,165
Scaffold L504
Number of contigs78
Contig N5022,201,688
Contig L509
Total number of chromosomes and plasmids7
Number of component sequences (WGS or clone)45

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_002994755.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM009582.1=NC_037088.10
Chromosome 2CM009583.1=NC_037089.10
Chromosome 3CM009584.1=NC_037090.10
Chromosome 4CM009585.1=NC_037091.10
Chromosome 5CM009586.1=NC_037092.10
Chromosome 6CM009587.1=NC_037093.10
Chromosome 7CM009588.1=NC_037094.10
unplacedn/an/an/a38

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All513,854,16845513,850,86869,643,165330
Chromosome 168,490,202168,489,80268,490,20240
Chromosome 288,556,329188,555,42988,556,32990
Chromosome 349,737,312149,737,21249,737,31210
Chromosome 467,241,324167,241,12467,241,32420
Chromosome 589,953,796189,953,19689,953,79660
Chromosome 669,643,165169,642,56569,643,16560
Chromosome 770,290,800170,290,30070,290,80050
unplaced9,941,240389,941,240293,40600
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