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ASM294713v1

Organism name:: Salmonella enterica subsp. enterica serovar Typhimurium (enterobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: AR_0031
BioSample:: SAMN04014872
BioProject:: PRJNA292901
Submitter:: Centers for Disease Control and Prevention
Date:: 2018/02/18
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_002947135.1 (latest)
RefSeq assembly accession:: GCF_002947135.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: HGAP v. 2.3
Genome coverage:: 138x
Sequencing technology:: PacBio RSII

IDs: 1590801 [UID] 6090728 [GenBank] 6155168 [RefSeq]

See Genome Information for Salmonella enterica

Pathogen Detection Resources

There are 526296 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002947135.1	=	GCF_002947135.1	ASM294713v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::12/13/2023 01:06:56
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,855
CDSs (total)::4,732
Genes (coding)::4,610
CDSs (with protein)::4,610
Genes (RNA)::123
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::86
ncRNAs::15
Pseudo Genes (total)::122
CDSs (without protein)::122
Pseudo Genes (ambiguous residues)::0 of 122
Pseudo Genes (frameshifted)::51 of 122
Pseudo Genes (incomplete)::83 of 122
Pseudo Genes (internal stop)::24 of 122
Pseudo Genes (multiple problems)::33 of 122
Pseudo Genes (short protein)::1 of 122
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	4,964,094
Total ungapped length	4,964,094
Total number of chromosomes and plasmids	2

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CP026700.1	=	NZ_CP026700.1
Plasmid unitig_1_pilon	CP026701.1	=	NZ_CP026701.1

Molecule	Total Length
All	4,964,094
Chromosome	4,870,262
Plasmid unitig_1_pilon	93,832

	ANI	Query coverage	Subject coverage
Declared type	99.96	98.01	98.26
Best-match type	99.96	98.01	98.26

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ASM294713v1

See Genome Information for Salmonella enterica

Pathogen Detection Resources

There are 526296 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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