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ASM291853v1

Organism name:
Citrobacter amalonaticus (enterobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: S647
BioSample:
SAMN08395891
BioProject:
PRJNA431620
Submitter:
Salmonella Syst-OMICS
Date:
2018/02/06
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_002918535.1 (latest)
RefSeq assembly accession:
GCF_002918535.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
PQMA01
Assembly method:
de novo A5 pipeline v. A5-miseq 20150522
Expected final version:
yes
Genome coverage:
30X
Sequencing technology:
Illumina MiSeq

IDs: 1555281 [UID] 5994788 [GenBank] 6010638 [RefSeq]

See Genome Information for Citrobacter amalonaticus

There are 158 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::02/01/2018 14:26:44
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,470
CDS (total)::5,356
Genes (coding)::5,134
CDS (coding)::5,134
Genes (RNA)::114
rRNAs::9, 6, 10 (5S, 16S, 23S)
complete rRNAs::9, 1 (5S, 16S)
partial rRNAs::5, 10 (16S, 23S)
tRNAs::78
ncRNAs::11
Pseudo Genes (total)::222
Pseudo Genes (ambiguous residues)::0 of 222
Pseudo Genes (frameshifted)::112 of 222
Pseudo Genes (incomplete)::128 of 222
Pseudo Genes (internal stop)::49 of 222
Pseudo Genes (multiple problems)::62 of 222
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,534,887
Total ungapped length5,534,887
Number of contigs22
Contig N50538,118
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)22

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,534,887225,534,887538,11800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Citrobacter amalonaticusCitrobacter amalonaticus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_018323885.1Citrobacter amalonaticustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900446925.1Citrobacter koseritype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type84.6756.2961.40
Best-match type85.3052.0561.80

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna