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ASM291398v1

Organism name:
Campylobacter concisus (e-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: AAUH-1Dtra
BioSample:
SAMN08200451
BioProject:
PRJNA395841
Submitter:
University of Bath
Date:
2018/02/02
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_002913985.1 (latest)
RefSeq assembly accession:
GCF_002913985.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
POZQ01
Assembly method:
SPAdes v. 3.7.0
Expected final version:
yes
Genome coverage:
50x
Sequencing technology:
Illumina MiSeq

IDs: 1551851 [UID] 5984058 [GenBank] 5991488 [RefSeq]

See Genome Information for Campylobacter concisus

There are 297 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length1,897,732
Total ungapped length1,897,732
Number of contigs93
Contig N5039,458
Contig L5015
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)93

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,897,732931,897,73239,45800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Campylobacter concisusCampylobacter concisus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001298465.1Campylobacter concisussuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001298465.1Campylobacter concisussuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type89.0274.6877.02
Best-match type89.0274.6877.02

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-matchna