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ASM290925v1

Organism name:
Arenibacter hampyeongensis (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: JCM 17788
BioSample:
SAMN08100003
BioProject:
PRJNA419854
Submitter:
Guangdong Institute of Microbiology
Date:
2018/01/30
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_002909255.1 (latest)
RefSeq assembly accession:
GCF_002909255.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
PIOB01
Assembly method:
SPAdes v. 3.10.1
Expected final version:
yes
Genome coverage:
300x
Sequencing technology:
Illumina

IDs: 1549121 [UID] 5963018 [GenBank] 5977238 [RefSeq]

See Genome Information for Arenibacter hampyeongensis

History (Show revision history)

Comment

Global statistics

Total sequence length5,431,642
Total ungapped length5,431,642
Number of contigs28
Contig N50560,846
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)28

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,431,642285,431,642560,84600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Arenibacter hampyeongensisArenibacter hampyeongensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014397245.1Arenibacter arenosicollistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type89.2772.7873.25

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected