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ISE6_asm2.2_deduplicated

Organism name:
Ixodes scapularis (black-legged tick)
BioSample:
SAMN06329993
BioProject:
PRJNA345486
Submitter:
J. Craig Venter Institute
Date:
2018/09/28
Assembly type:
haploid-with-alt-loci
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_002892825.2 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
PKSA02
Assembly method:
Canu v. 1.6
Expected final version:
no
Genome coverage:
92.0x
Sequencing technology:
PacBio

IDs: 1996081 [UID] 7508378 [GenBank]

See Genome Information for Ixodes scapularis

There are 2 assemblies for this organism

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History (Show revision history)

Comment

This is a phased diploid assembly from the Ixodes scapularis ISE6 cell line. The contigs of the primary assembly are located in PKSA02000001-PKSA02006476. The alternative haploid contigs (haplotigs) are located in PKSA02006477-PKSA02019746.

Global statistics*

Number of regions with alternate loci or patches4,864
Total sequence length2,081,329,876
Total ungapped length2,081,329,876
Number of contigs6,476
Contig N50835,681
Contig L50592
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)6,476

*Note: Statistics shown for the primary assembly-unit. See the statistics report for additional statistics.

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Alts
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,081,329,8766,4762,081,329,876835,68100
Unit NameContig
Count
Total
Length
Ungapped
Length
Contig
N50
Spanned
Gaps
Alts13,2701,007,294,1111,007,294,111167,3580
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