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ASM288706v1

Organism name:
Mycobacterium tuberculosis (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: GG-36-11
BioSample:
SAMN08199267
BioProject:
PRJNA422870
Submitter:
Duke University
Date:
2018/01/17
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_002887065.1 (latest)
RefSeq assembly accession:
GCF_002887065.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
bwa Reference alignment v. 0.7.1
Expected final version:
yes
Reference guided assembly:
NC_000962.3
Genome coverage:
557.0x
Sequencing technology:
Illumina HiSeq

IDs: 1526431 [UID] 5893188 [GenBank] 5917378 [RefSeq]

See Genome Information for Mycobacterium tuberculosis

There are 7610 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/09/2023 09:54:53
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,158
CDSs (total)::4,107
Genes (coding)::3,946
CDSs (with protein)::3,946
Genes (RNA)::51
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::45
ncRNAs::3
Pseudo Genes (total)::161
CDSs (without protein)::161
Pseudo Genes (ambiguous residues)::0 of 161
Pseudo Genes (frameshifted)::79 of 161
Pseudo Genes (incomplete)::99 of 161
Pseudo Genes (internal stop)::18 of 161
Pseudo Genes (multiple problems)::29 of 161
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,411,469
Total ungapped length4,411,469
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_002887075.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP025597.1=NZ_CP025597.1

Assembly statistics

MoleculeTotal
Length
Chromosome 4,411,469

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Mycobacterium tuberculosisMycobacterium tuberculosis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000195955.2Mycobacterium tuberculosis H37Rvtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000195955.2Mycobacterium tuberculosistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.97100.00100.00
Best-match type99.97100.00100.00

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna