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ASM275486v1

Organism name:
Callithrix jacchus (white-tufted-ear marmoset)
Infraspecific name:
Breed: NEPRC
Isolate:
CJ-08-46
Sex:
female
BioSample:
SAMN07586072
BioProject:
PRJNA401030
Submitter:
Broad Institute
Date:
2017/11/06
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_002754865.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
NTIC01
Assembly method:
Discovar denovo v. 52488; Chicago/HiRise v. 1.3.0-117-g854f52f; HiC/HiRise v. 2.1.2-ad17ecf8bf57
Expected final version:
no
Genome coverage:
60.0x
Sequencing technology:
Illumina HiSeq

IDs: 1432951 [UID] 5620578 [GenBank]

See Genome Information for Callithrix jacchus

There are 11 assemblies for this organism

See more

History (Show revision history)

Comment

All assembly gaps are from paired-end information, but from different technologies. 100 bp gaps are from scaffolding by Discovar de-novo, 200 bp gaps are from scaffolding by Chicago/HiRise (Dovetail Genomics), and 300 bp gaps are from scaffolding by Hic/HiRise ... (Dovetail Genomics).  more

Global statistics

Total sequence length2,845,375,248
Total ungapped length2,835,864,148
Gaps between scaffolds0
Number of scaffolds39,944
Scaffold N50129,239,660
Scaffold L509
Number of contigs88,439
Contig N50155,284
Contig L505,014
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)39,944

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,845,375,24839,9442,835,864,148129,239,66048,4950
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