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CAU_duck1.0

Organism name:
Anas platyrhynchos platyrhynchos (common mallard)
Infraspecific name:
Breed: Pekin duck
Sex:
male
BioSample:
SAMN07569716
BioProject:
PRJNA403935
Submitter:
China Agricultural University
Date:
2017/11/03
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_002743455.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
PEDO01
Assembly method:
Iris, supernova v. 2016-5
Expected final version:
yes
Genome coverage:
150.0x
Sequencing technology:
Illumina HiSeq; 10X Genomics; Bionano

IDs: 1426091 [UID] 5606198 [GenBank]

See Genome Information for Anas platyrhynchos

There are 5 assemblies for this organism

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History (Show revision history)

Global statistics

Total sequence length1,136,415,614
Total ungapped length1,080,105,771
Gaps between scaffolds0
Number of scaffolds21,240
Scaffold N5074,988,519
Scaffold L505
Number of contigs44,791
Contig N5088,037
Contig L503,342
Total number of chromosomes and plasmids29
Number of component sequences (WGS or clone)21,442

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_002743465.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM008538.1n/an/a0
Chromosome 2CM008539.1n/an/a0
Chromosome 3CM008540.1n/an/a0
Chromosome 4CM008541.1n/an/a0
Chromosome 5CM008542.1n/an/a0
Chromosome 6CM008543.1n/an/a0
Chromosome 7CM008544.1n/an/a0
Chromosome 8CM008545.1n/an/a0
Chromosome 9CM008546.1n/an/a0
Chromosome 10CM008547.1n/an/a0
Chromosome 11CM008548.1n/an/a0
Chromosome 12CM008549.1n/an/a0
Chromosome 13CM008550.1n/an/a0
Chromosome 14CM008551.1n/an/a0
Chromosome 15CM008552.1n/an/a0
Chromosome 16CM008553.1n/an/a0
Chromosome 18CM008554.1n/an/a0
Chromosome 19CM008555.1n/an/a0
Chromosome 20CM008556.1n/an/a0
Chromosome 21CM008557.1n/an/a0
Chromosome 22CM008558.1n/an/a0
Chromosome 23CM008559.1n/an/a0
Chromosome 24CM008560.1n/an/a0
Chromosome 25CM008561.1n/an/a0
Chromosome 26CM008562.1n/an/a0
Chromosome 27CM008563.1n/an/a0
Chromosome 28CM008564.1n/an/a0
Chromosome 29CM008565.1n/an/a0
Chromosome ZCM008566.1n/an/a0
unplacedn/an/an/a21,211

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All1,136,415,61421,2401,080,105,77174,988,51923,5510
Chromosome 1202,396,4061192,872,488202,396,4064,4060
Chromosome 2155,938,5671149,360,332155,938,5673,2290
Chromosome 3116,605,5671112,222,414116,605,5672,1500
Chromosome 474,988,519172,562,97674,988,5191,1260
Chromosome 564,310,432161,205,31864,310,4321,0490
Chromosome 636,941,404135,590,05436,941,4044590
Chromosome 739,008,943137,898,75839,008,9435650
Chromosome 832,166,367130,454,65432,166,3675090
Chromosome 926,196,943124,974,95526,196,9433880
Chromosome 1020,768,007119,958,74820,768,0073220
Chromosome 1121,676,943120,641,94321,676,9433510
Chromosome 1221,437,265120,197,80521,437,2652880
Chromosome 1321,540,082120,746,14221,540,0822730
Chromosome 1419,086,185118,050,39519,086,1853440
Chromosome 1517,546,554116,238,69417,546,5543270
Chromosome 1614,897,563114,149,43914,897,5632350
Chromosome 1811,808,658110,619,41811,808,6582420
Chromosome 1912,514,099111,581,13812,514,0992440
Chromosome 2011,188,171110,116,05111,188,1712210
Chromosome 2115,639,946114,460,96115,639,9463050
Chromosome 228,175,02517,513,0548,175,0251530
Chromosome 234,815,58414,444,4344,815,584860
Chromosome 247,543,57316,952,9937,543,5731410
Chromosome 257,715,14217,038,6727,715,1421520
Chromosome 262,247,20211,663,5822,247,2021010
Chromosome 276,387,23915,420,3286,387,2391980
Chromosome 285,046,83514,281,3855,046,8351660
Chromosome 294,846,36814,173,2184,846,3681420
Chromosome Z83,005,069177,946,94683,005,0692,5070
unplaced69,976,95621,21166,768,4764,2222,8720
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