U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



Try the new Datasets Genome page

ASM259115v1

Organism name:
Proteus vulgaris (enterobacteria)
Taxonomy check:
Failed
Infraspecific name:
Strain: FDAARGOS_366
BioSample:
SAMN07312410
BioProject:
PRJNA231221
Submitter:
University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center
Date:
2017/10/18
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_002591155.1 (latest)
RefSeq assembly accession:
GCF_002591155.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Celera v. 8.2
Genome coverage:
14.72x
Sequencing technology:
PacBio; Illumina

IDs: 1348261 [UID] 5410848 [GenBank] 5477938 [RefSeq]

See Genome Information for Proteus vulgaris

There are 32 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::10/22/2021 01:24:08
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,646
CDSs (total)::3,534
Genes (coding)::3,478
CDSs (with protein)::3,478
Genes (RNA)::112
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::86
ncRNAs::4
Pseudo Genes (total)::56
CDSs (without protein)::56
Pseudo Genes (ambiguous residues)::0 of 56
Pseudo Genes (frameshifted)::23 of 56
Pseudo Genes (incomplete)::31 of 56
Pseudo Genes (internal stop)::12 of 56
Pseudo Genes (multiple problems)::8 of 56
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,961,988
Total ungapped length3,961,988
Total number of chromosomes and plasmids1

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_002591165.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP023965.1=NZ_CP023965.1

Assembly statistics

MoleculeTotal
Length
Chromosome 3,961,988

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Proteus vulgarisProteus vulgaris

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_901472505.1Proteus vulgarissuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003144325.1Proteus terraetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type89.7586.7787.60
Best-match type96.9189.5986.61

ANI result

Taxonomy check statusBest match statusComment
Failedmismatchna
Support Center