U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM258626v1

  • Anomalous assembly.
Organism name:
Bacillus cereus (firmicutes)
Taxonomy check:
Failed
Infraspecific name:
Strain: AFS030086
BioSample:
SAMN07597793
BioProject:
PRJNA400804
Submitter:
UNC Chapel Hill
Date:
2017/10/18
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Assembly anomaly:
unverified source organism
Excluded from RefSeq:
  • unverified source organism
GenBank assembly accession:
GCA_002586265.1 (latest)
RefSeq assembly accession:
GCF_002586265.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
NUPP01
Assembly method:
CLC Assembly Cell v. 4.2.1
Expected final version:
yes
Genome coverage:
29.73x
Sequencing technology:
Illumina HiSeq

IDs: 1345861 [UID] 5405518 [GenBank] 5479808 [RefSeq]

See Genome Information for Bacillus cereus

There are 2514 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/17/2017 23:09:15
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,625
CDS (total)::6,556
Genes (coding)::6,138
CDS (coding)::6,138
Genes (RNA)::69
rRNAs::1, 1 (16S, 23S)
complete rRNAs::1, 1 (16S, 23S)
tRNAs::62
ncRNAs::5
Pseudo Genes (total)::418
Pseudo Genes (ambiguous residues)::6 of 418
Pseudo Genes (frameshifted)::187 of 418
Pseudo Genes (incomplete)::189 of 418
Pseudo Genes (internal stop)::134 of 418
Pseudo Genes (multiple problems)::87 of 418
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,071,924
Total ungapped length6,071,598
Gaps between scaffolds0
Number of scaffolds396
Scaffold N5058,235
Scaffold L5024
Number of contigs407
Contig N5055,426
Contig L5025
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)396

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,071,9243966,071,59858,235110

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacillus cereusBacillus cereus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900445355.1Bacillus cereustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001884135.1Bacillus nitratireducenstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type90.3267.3875.54
Best-match type98.6081.5890.26

ANI result

Taxonomy check statusBest match statusComment
Failedmismatchna