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ASM258158v1

Organism name:
Bacillus wiedmannii (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: AFS045893
BioSample:
SAMN07598009
BioProject:
PRJNA400804
Submitter:
UNC Chapel Hill
Date:
2017/10/18
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_002581585.1 (latest)
RefSeq assembly accession:
GCF_002581585.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
NUSH01
Assembly method:
CLC Assembly Cell v. 4.2.1
Expected final version:
yes
Genome coverage:
63.93x
Sequencing technology:
Illumina HiSeq

IDs: 1343501 [UID] 5400728 [GenBank] 5443328 [RefSeq]

See Genome Information for Bacillus wiedmannii

There are 236 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/18/2017 04:29:33
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,770
CDS (total)::5,694
Genes (coding)::5,428
CDS (coding)::5,428
Genes (RNA)::76
rRNAs::1, 1 (16S, 23S)
complete rRNAs::1, 1 (16S, 23S)
tRNAs::69
ncRNAs::5
Pseudo Genes (total)::266
Pseudo Genes (ambiguous residues)::1 of 266
Pseudo Genes (frameshifted)::131 of 266
Pseudo Genes (incomplete)::97 of 266
Pseudo Genes (internal stop)::102 of 266
Pseudo Genes (multiple problems)::58 of 266
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,383,505
Total ungapped length5,383,482
Gaps between scaffolds0
Number of scaffolds101
Scaffold N50191,698
Scaffold L509
Number of contigs102
Contig N50191,698
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)101

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,383,5051015,383,482191,69810

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacillus wiedmanniiBacillus wiedmannii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001583695.1Bacillus wiedmanniitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001583695.1Bacillus wiedmanniitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type96.4187.4088.15
Best-match type96.4187.4088.15

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna