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ASM257924v1

Organism name:
Bacillus toyonensis (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: AFS056055
BioSample:
SAMN07598141
BioProject:
PRJNA400804
Submitter:
UNC Chapel Hill
Date:
2017/10/18
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_002579245.1 (latest)
RefSeq assembly accession:
GCF_002579245.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
NUQQ01
Assembly method:
CLC Assembly Cell v. 4.2.1
Expected final version:
yes
Genome coverage:
61.57x
Sequencing technology:
Illumina HiSeq

IDs: 1342331 [UID] 5398368 [GenBank] 5444928 [RefSeq]

See Genome Information for Bacillus toyonensis

There are 343 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/18/2017 02:58:39
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,332
CDS (total)::6,254
Genes (coding)::5,897
CDS (coding)::5,897
Genes (RNA)::78
rRNAs::1, 1 (16S, 23S)
complete rRNAs::1, 1 (16S, 23S)
tRNAs::71
ncRNAs::5
Pseudo Genes (total)::357
Pseudo Genes (ambiguous residues)::0 of 357
Pseudo Genes (frameshifted)::167 of 357
Pseudo Genes (incomplete)::148 of 357
Pseudo Genes (internal stop)::130 of 357
Pseudo Genes (multiple problems)::79 of 357
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,960,433
Total ungapped length5,960,418
Gaps between scaffolds0
Number of scaffolds139
Scaffold N50136,527
Scaffold L5014
Number of contigs140
Contig N50136,527
Contig L5014
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)139

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,960,4331395,960,418136,52710

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacillus toyonensisBacillus toyonensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000496285.1Bacillus toyonensis BCT-7112type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000496285.1Bacillus toyonensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.7778.0992.63
Best-match type98.7778.0992.63

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna