U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM257911v1

Organism name:
Bacillus pseudomycoides (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: AFS056801
BioSample:
SAMN07598153
BioProject:
PRJNA400804
Submitter:
UNC Chapel Hill
Date:
2017/10/18
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_002579115.1 (latest)
RefSeq assembly accession:
GCF_002579115.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
NUQM01
Assembly method:
CLC Assembly Cell v. 4.2.1
Expected final version:
yes
Genome coverage:
54.4x
Sequencing technology:
Illumina HiSeq

IDs: 1342281 [UID] 5398248 [GenBank] 5442588 [RefSeq]

See Genome Information for Bacillus pseudomycoides

There are 134 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/18/2017 02:55:39
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,913
CDS (total)::5,830
Genes (coding)::5,352
CDS (coding)::5,352
Genes (RNA)::83
rRNAs::1, 1 (16S, 23S)
complete rRNAs::1, 1 (16S, 23S)
tRNAs::76
ncRNAs::5
Pseudo Genes (total)::478
Pseudo Genes (ambiguous residues)::3 of 478
Pseudo Genes (frameshifted)::173 of 478
Pseudo Genes (incomplete)::294 of 478
Pseudo Genes (internal stop)::117 of 478
Pseudo Genes (multiple problems)::97 of 478
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,527,589
Total ungapped length5,526,773
Gaps between scaffolds0
Number of scaffolds231
Scaffold N5081,737
Scaffold L5019
Number of contigs251
Contig N5076,511
Contig L5019
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)231

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,527,5892315,526,77381,737200

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacillus pseudomycoidesBacillus pseudomycoides

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000161455.1Bacillus pseudomycoides DSM 12442type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000161455.1Bacillus pseudomycoidestype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type96.4783.0379.78
Best-match type96.4783.0379.78

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna