U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM257744v1

Organism name:
Bacillus thuringiensis (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: AFS040987
BioSample:
SAMN07597936
BioProject:
PRJNA400804
Submitter:
UNC Chapel Hill
Date:
2017/10/18
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_002577445.1 (latest)
RefSeq assembly accession:
GCF_002577445.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
NULS01
Assembly method:
CLC Assembly Cell v. 4.2.1
Expected final version:
yes
Genome coverage:
78.17x
Sequencing technology:
Illumina HiSeq

IDs: 1341421 [UID] 5396558 [GenBank] 5444828 [RefSeq]

See Genome Information for Bacillus thuringiensis

There are 1330 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/17/2017 17:05:14
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,415
CDS (total)::6,340
Genes (coding)::5,961
CDS (coding)::5,961
Genes (RNA)::75
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::67
ncRNAs::5
Pseudo Genes (total)::379
Pseudo Genes (ambiguous residues)::1 of 379
Pseudo Genes (frameshifted)::198 of 379
Pseudo Genes (incomplete)::164 of 379
Pseudo Genes (internal stop)::136 of 379
Pseudo Genes (multiple problems)::105 of 379
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,091,726
Total ungapped length6,091,543
Gaps between scaffolds0
Number of scaffolds159
Scaffold N50170,828
Scaffold L509
Number of contigs166
Contig N50170,828
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)159

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,091,7261596,091,543170,82870

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacillus thuringiensisBacillus thuringiensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000161615.1Bacillus thuringiensis serovar berliner ATCC 10792suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000161615.1Bacillus thuringiensissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type96.5281.4579.58
Best-match type96.5281.4579.58

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-matchna