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Aet v4.0

Organism name:
Aegilops tauschii subsp. strangulata (monocots)
Infraspecific name:
Cultivar: AL8/78
BioSample:
SAMN05426520
BioProject:
PRJNA341983
Submitter:
Johns Hopkins University
Date:
2017/10/18
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_002575655.1 (replaced)
RefSeq assembly accession:
GCF_002575655.1 (replaced)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: 457 unlocalized scaffolds on chromosomes MT and Pltd
  • Data displayed for RefSeq version
WGS Project:
NWVB01
Assembly method:
DeNovoMAGIC v. OCT-2015; SOAPdenovo v. 2.r240
Expected final version:
no
Genome coverage:
200.0x
Sequencing technology:
Illumina

IDs: 1348421 [UID] 5411168 [GenBank] 25045708 [RefSeq]

See Genome Information for Aegilops tauschii

There are 4 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length4,223,628,083
Total ungapped length4,127,754,360
Gaps between scaffolds0
Number of scaffolds109,126
Scaffold N50577,375,663
Scaffold L504
Number of contigs208,901
Contig N50102,787
Contig L5011,952
Total number of chromosomes and plasmids7
Number of component sequences (WGS or clone)109,126

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_002575785.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1DCM008368.1=NC_053035.10
Chromosome 2DCM008369.1=NC_053036.10
Chromosome 3DCM008370.1=NC_053037.10
Chromosome 4DCM008371.1=NC_053038.10
Chromosome 5DCM008372.1=NC_053039.10
Chromosome 6DCM008373.1=NC_053040.10
Chromosome 7DCM008374.1=NC_053041.10
unplacedn/an/an/a109,119

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All4,223,628,083109,1264,127,754,360577,375,66399,7750
Chromosome 1D502,330,2511491,953,509502,330,25110,7760
Chromosome 2D651,661,1141640,882,342651,661,11413,3470
Chromosome 3D627,182,6651616,064,952627,182,66513,4240
Chromosome 4D526,018,7851516,565,006526,018,78510,0360
Chromosome 5D577,375,6631562,748,080577,375,66312,4300
Chromosome 6D496,019,5271486,907,626496,019,52710,5790
Chromosome 7D644,716,1371627,393,493644,716,13714,1200
unplaced198,323,941109,119185,239,3527,16615,0630