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Source database (GenBank or RefSeq) File type

Aet v4.0

This assembly has been replaced. See current version

Organism name:

Aegilops tauschii subsp. strangulata (monocots)

Infraspecific name:

Cultivar: AL8/78

BioSample:

SAMN05426520

BioProject:

PRJNA341983

Submitter:

Johns Hopkins University

Date:

2017/10/18

Assembly level:

Chromosome

Genome representation:

full

GenBank assembly accession:

GCA_002575655.1 (replaced)

RefSeq assembly accession:

GCF_002575655.1 (replaced)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: 457 unlocalized scaffolds on chromosomes MT and Pltd

Data displayed for RefSeq version

WGS Project:

NWVB01

Assembly method:

DeNovoMAGIC v. OCT-2015; SOAPdenovo v. 2.r240

Expected final version:

Genome coverage:

200.0x

Sequencing technology:

Illumina

IDs: 1348421 [UID] 5411168 [GenBank] 25045708 [RefSeq]

See Genome Information for Aegilops tauschii

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002575655.2	≠	GCF_002575655.2	Aet v5.0	Chromosome	Latest GenBank, Latest RefSeq
GCA_002575655.1	≠	GCF_002575655.1	Aet v4.0	Chromosome	Replaced GenBank, Replaced RefSeq

Comment

Global statistics

Total sequence length	4,223,628,083
Total ungapped length	4,127,754,360
Gaps between scaffolds	0
Number of scaffolds	109,126
Scaffold N50	577,375,663
Scaffold L50	4
Number of contigs	208,901
Contig N50	102,787
Contig L50	11,952
Total number of chromosomes and plasmids	7
Number of component sequences (WGS or clone)	109,126

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1D	CM008368.1	=	NC_053035.1	0
Chromosome 2D	CM008369.1	=	NC_053036.1	0
Chromosome 3D	CM008370.1	=	NC_053037.1	0
Chromosome 4D	CM008371.1	=	NC_053038.1	0
Chromosome 5D	CM008372.1	=	NC_053039.1	0
Chromosome 6D	CM008373.1	=	NC_053040.1	0
Chromosome 7D	CM008374.1	=	NC_053041.1	0
unplaced	n/a	n/a	n/a	109,119

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	4,223,628,083	109,126	4,127,754,360	577,375,663	99,775
Chromosome 1D	502,330,251	1	491,953,509	502,330,251	10,776
Chromosome 2D	651,661,114	1	640,882,342	651,661,114	13,347
Chromosome 3D	627,182,665	1	616,064,952	627,182,665	13,424
Chromosome 4D	526,018,785	1	516,565,006	526,018,785	10,036
Chromosome 5D	577,375,663	1	562,748,080	577,375,663	12,430
Chromosome 6D	496,019,527	1	486,907,626	496,019,527	10,579
Chromosome 7D	644,716,137	1	627,393,493	644,716,137	14,120
unplaced	198,323,941	109,119	185,239,352	7,166	15,063

Assembly

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Aet v4.0

See Genome Information for Aegilops tauschii

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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