U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM257471v1

Organism name:
Bacillus cereus (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: AFS057596
BioSample:
SAMN07598165
BioProject:
PRJNA400804
Submitter:
UNC Chapel Hill
Date:
2017/10/18
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_002574715.1 (latest)
RefSeq assembly accession:
GCF_002574715.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
NUFS01
Assembly method:
CLC Assembly Cell v. 4.2.1
Expected final version:
yes
Genome coverage:
46.05x
Sequencing technology:
Illumina HiSeq

IDs: 1340061 [UID] 5393828 [GenBank] 5440378 [RefSeq]

See Genome Information for Bacillus cereus

There are 2512 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/17/2017 17:14:48
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,134
CDS (total)::6,059
Genes (coding)::5,737
CDS (coding)::5,737
Genes (RNA)::75
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1 (16S, 23S)
partial rRNAs::1 (5S)
tRNAs::67
ncRNAs::5
Pseudo Genes (total)::322
Pseudo Genes (ambiguous residues)::1 of 322
Pseudo Genes (frameshifted)::151 of 322
Pseudo Genes (incomplete)::161 of 322
Pseudo Genes (internal stop)::106 of 322
Pseudo Genes (multiple problems)::87 of 322
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,694,908
Total ungapped length5,694,702
Gaps between scaffolds0
Number of scaffolds114
Scaffold N50163,939
Scaffold L5011
Number of contigs119
Contig N50163,939
Contig L5011
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)114

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,694,9081145,694,702163,93950

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacillus cereusBacillus cereus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000007825.1Bacillus cereus ATCC 14579type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000007825.1Bacillus cereustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.2183.0887.18
Best-match type97.2183.0887.18

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna