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ASM257207v1

Organism name:
Bacillus pseudomycoides (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: AFS063129
BioSample:
SAMN07598239
BioProject:
PRJNA400804
Submitter:
UNC Chapel Hill
Date:
2017/10/17
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_002572075.1 (latest)
RefSeq assembly accession:
GCF_002572075.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
NVJI01
Assembly method:
CLC Assembly Cell v. 4.2.1
Expected final version:
yes
Genome coverage:
45.21x
Sequencing technology:
Illumina HiSeq

IDs: 1338801 [UID] 5389588 [GenBank] 5438708 [RefSeq]

See Genome Information for Bacillus pseudomycoides

There are 134 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/17/2017 06:41:43
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,075
CDS (total)::5,994
Genes (coding)::5,592
CDS (coding)::5,592
Genes (RNA)::81
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::73
ncRNAs::5
Pseudo Genes (total)::402
Pseudo Genes (ambiguous residues)::2 of 402
Pseudo Genes (frameshifted)::177 of 402
Pseudo Genes (incomplete)::207 of 402
Pseudo Genes (internal stop)::125 of 402
Pseudo Genes (multiple problems)::101 of 402
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,706,323
Total ungapped length5,706,046
Gaps between scaffolds0
Number of scaffolds247
Scaffold N5081,284
Scaffold L5020
Number of contigs258
Contig N5081,284
Contig L5020
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)247

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,706,3232475,706,04681,284110

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacillus pseudomycoidesBacillus pseudomycoides

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000161455.1Bacillus pseudomycoides DSM 12442type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000161455.1Bacillus pseudomycoidestype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.3389.8989.17
Best-match type99.3389.8989.17

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna