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ASM256960v1

Organism name:
Bacillus pseudomycoides (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: AFS080276
BioSample:
SAMN07598468
BioProject:
PRJNA400804
Submitter:
UNC Chapel Hill
Date:
2017/10/17
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_002569605.1 (latest)
RefSeq assembly accession:
GCF_002569605.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
NVGC01
Assembly method:
CLC Assembly Cell v. 4.2.206
Expected final version:
yes
Genome coverage:
57.09x
Sequencing technology:
Illumina HiSeq

IDs: 1337541 [UID] 5387108 [GenBank] 5427668 [RefSeq]

See Genome Information for Bacillus pseudomycoides

There are 134 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/18/2017 12:17:18
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,030
CDS (total)::5,951
Genes (coding)::5,466
CDS (coding)::5,466
Genes (RNA)::79
rRNAs::3, 1, 1 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
partial rRNAs::1 (5S)
tRNAs::69
ncRNAs::5
Pseudo Genes (total)::485
Pseudo Genes (ambiguous residues)::3 of 485
Pseudo Genes (frameshifted)::185 of 485
Pseudo Genes (incomplete)::280 of 485
Pseudo Genes (internal stop)::130 of 485
Pseudo Genes (multiple problems)::103 of 485
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,663,048
Total ungapped length5,662,554
Gaps between scaffolds0
Number of scaffolds221
Scaffold N5083,854
Scaffold L5021
Number of contigs237
Contig N5081,931
Contig L5024
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)221

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,663,0482215,662,55483,854160

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacillus pseudomycoidesBacillus pseudomycoides

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000161455.1Bacillus pseudomycoides DSM 12442type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000161455.1Bacillus pseudomycoidestype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type96.4881.3480.09
Best-match type96.4881.3480.09

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna