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ASM256684v1

Organism name:
Bacillus cereus (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: AFS074395
BioSample:
SAMN07598388
BioProject:
PRJNA400804
Submitter:
UNC Chapel Hill
Date:
2017/10/17
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_002566845.1 (latest)
RefSeq assembly accession:
GCF_002566845.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
NUZN01
Assembly method:
CLC Assembly Cell v. 4.2.126
Expected final version:
yes
Genome coverage:
88.89x
Sequencing technology:
Illumina HiSeq

IDs: 1336181 [UID] 5384388 [GenBank] 5424348 [RefSeq]

See Genome Information for Bacillus cereus

There are 2514 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/17/2017 17:29:10
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,994
CDS (total)::4,915
Genes (coding)::4,709
CDS (coding)::4,709
Genes (RNA)::79
rRNAs::2, 1, 1 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
tRNAs::70
ncRNAs::5
Pseudo Genes (total)::206
Pseudo Genes (ambiguous residues)::0 of 206
Pseudo Genes (frameshifted)::80 of 206
Pseudo Genes (incomplete)::122 of 206
Pseudo Genes (internal stop)::58 of 206
Pseudo Genes (multiple problems)::46 of 206
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,789,675
Total ungapped length4,789,632
Gaps between scaffolds0
Number of scaffolds103
Scaffold N50105,380
Scaffold L5014
Number of contigs105
Contig N50105,380
Contig L5014
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)103

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,789,6751034,789,632105,38020

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacillus cereusBacillus cereus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000007825.1Bacillus cereus ATCC 14579type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000299035.1Bacillus bingmayongensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type85.2044.0838.90
Best-match type89.7869.9561.24

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna