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ASM256664v1

Organism name:
Bacillus thuringiensis (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: AFS076262
BioSample:
SAMN07598416
BioProject:
PRJNA400804
Submitter:
UNC Chapel Hill
Date:
2017/10/17
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_002566645.1 (latest)
RefSeq assembly accession:
GCF_002566645.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
NUYX01
Assembly method:
CLC Assembly Cell v. 4.2.154
Expected final version:
yes
Genome coverage:
66.48x
Sequencing technology:
Illumina HiSeq

IDs: 1336071 [UID] 5384148 [GenBank] 5424408 [RefSeq]

See Genome Information for Bacillus thuringiensis

There are 1330 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/17/2017 15:56:54
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,437
CDS (total)::6,359
Genes (coding)::6,007
CDS (coding)::6,007
Genes (RNA)::78
rRNAs::1, 1 (16S, 23S)
complete rRNAs::1, 1 (16S, 23S)
tRNAs::71
ncRNAs::5
Pseudo Genes (total)::352
Pseudo Genes (ambiguous residues)::1 of 352
Pseudo Genes (frameshifted)::183 of 352
Pseudo Genes (incomplete)::147 of 352
Pseudo Genes (internal stop)::125 of 352
Pseudo Genes (multiple problems)::91 of 352
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,107,005
Total ungapped length6,106,929
Gaps between scaffolds0
Number of scaffolds145
Scaffold N50174,161
Scaffold L5011
Number of contigs149
Contig N50174,161
Contig L5011
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)145

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,107,0051456,106,929174,16140

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacillus thuringiensisBacillus thuringiensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002119445.1Bacillus thuringiensissuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002119445.1Bacillus thuringiensissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type96.4281.0678.37
Best-match type96.4281.0678.37

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-matchna