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ASM256546v1

Organism name:
Bacillus cereus (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: AFS082943
BioSample:
SAMN07598506
BioProject:
PRJNA400804
Submitter:
UNC Chapel Hill
Date:
2017/10/17
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_002565465.1 (latest)
RefSeq assembly accession:
GCF_002565465.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
NUWP01
Assembly method:
CLC Assembly Cell v. 4.2.244
Expected final version:
yes
Genome coverage:
44x
Sequencing technology:
Illumina HiSeq

IDs: 1335481 [UID] 5382988 [GenBank] 5423588 [RefSeq]

See Genome Information for Bacillus cereus

There are 2513 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/17/2017 13:49:39
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,188
CDS (total)::6,109
Genes (coding)::5,796
CDS (coding)::5,796
Genes (RNA)::79
rRNAs::1, 1 (16S, 23S)
complete rRNAs::1, 1 (16S, 23S)
tRNAs::72
ncRNAs::5
Pseudo Genes (total)::313
Pseudo Genes (ambiguous residues)::0 of 313
Pseudo Genes (frameshifted)::171 of 313
Pseudo Genes (incomplete)::133 of 313
Pseudo Genes (internal stop)::107 of 313
Pseudo Genes (multiple problems)::83 of 313
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,856,091
Total ungapped length5,855,838
Gaps between scaffolds0
Number of scaffolds92
Scaffold N50304,537
Scaffold L505
Number of contigs99
Contig N50304,537
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)92

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,856,091925,855,838304,53770

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacillus cereusBacillus cereus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000007825.1Bacillus cereus ATCC 14579type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000007825.1Bacillus cereustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.1681.1487.55
Best-match type97.1681.1487.55

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna