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ASM256319v1

  • Anomalous assembly.
Organism name:
Bacillus cereus (firmicutes)
Taxonomy check:
Failed
Infraspecific name:
Strain: AFS020540
BioSample:
SAMN07597503
BioProject:
PRJNA400804
Submitter:
UNC Chapel Hill
Date:
2017/10/16
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Assembly anomaly:
unverified source organism
Excluded from RefSeq:
  • unverified source organism
GenBank assembly accession:
GCA_002563195.1 (latest)
RefSeq assembly accession:
GCF_002563195.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
NTSM01
Assembly method:
CLC Assembly Cell v. 4.2.1
Expected final version:
yes
Genome coverage:
46.61x
Sequencing technology:
Illumina HiSeq

IDs: 1334371 [UID] 5371398 [GenBank] 5421808 [RefSeq]

See Genome Information for Bacillus cereus

There are 2514 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/14/2017 14:43:41
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,287
CDS (total)::6,216
Genes (coding)::5,810
CDS (coding)::5,810
Genes (RNA)::71
rRNAs::1, 1 (16S, 23S)
complete rRNAs::1 (16S)
partial rRNAs::1 (23S)
tRNAs::64
ncRNAs::5
Pseudo Genes (total)::406
Pseudo Genes (ambiguous residues)::0 of 406
Pseudo Genes (frameshifted)::168 of 406
Pseudo Genes (incomplete)::189 of 406
Pseudo Genes (internal stop)::134 of 406
Pseudo Genes (multiple problems)::76 of 406
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,841,244
Total ungapped length5,841,006
Gaps between scaffolds0
Number of scaffolds153
Scaffold N50153,921
Scaffold L5012
Number of contigs159
Contig N50147,938
Contig L5012
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)153

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,841,2441535,841,006153,92160

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacillus cereusBacillus cereus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000007825.1Bacillus cereus ATCC 14579type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001884135.1Bacillus nitratireducenstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type90.2570.5675.94
Best-match type98.4385.2790.76

ANI result

Taxonomy check statusBest match statusComment
Failedmismatchna