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ASM256295v1

Organism name:
Bacillus cereus (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: AFS029029
BioSample:
SAMN07597628
BioProject:
PRJNA400804
Submitter:
UNC Chapel Hill
Date:
2017/10/16
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_002562955.1 (latest)
RefSeq assembly accession:
GCF_002562955.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
NTSU01
Assembly method:
CLC Assembly Cell v. 4.2.1
Expected final version:
yes
Genome coverage:
47.94x
Sequencing technology:
Illumina HiSeq

IDs: 1334251 [UID] 5371158 [GenBank] 5420468 [RefSeq]

See Genome Information for Bacillus cereus

There are 2514 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/14/2017 14:53:54
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,910
CDS (total)::5,830
Genes (coding)::5,598
CDS (coding)::5,598
Genes (RNA)::80
rRNAs::1, 1 (16S, 23S)
complete rRNAs::1, 1 (16S, 23S)
tRNAs::73
ncRNAs::5
Pseudo Genes (total)::232
Pseudo Genes (ambiguous residues)::0 of 232
Pseudo Genes (frameshifted)::124 of 232
Pseudo Genes (incomplete)::104 of 232
Pseudo Genes (internal stop)::75 of 232
Pseudo Genes (multiple problems)::59 of 232
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,640,727
Total ungapped length5,640,586
Gaps between scaffolds0
Number of scaffolds65
Scaffold N50228,139
Scaffold L507
Number of contigs68
Contig N50214,479
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)65

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,640,727655,640,586228,13930

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacillus cereusBacillus cereus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000007825.1Bacillus cereus ATCC 14579type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000007825.1Bacillus cereustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.1983.9587.25
Best-match type97.1983.9587.25

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna